Aarhus University
Partek NGS and Microarray Workshop
Learn how to analyze NGS and microarray data using Partek® software. Our scientists will take you step-by-step through the analysis process. No command line interface, no programming language. Just simple point-and-click actions that anyone can do. You will walk away with the knowledge needed to confidently analyze your own data.

NGS Analysis
May 15, 2018 | 9:00 a.m. - 1:30 p.m.

RNA-Seq Exercise with Partek® Flow® (Hands-on)
  • Data import and annotation
  • QA/QC for NGS data
  • Trimming and alignment
  • Quantification
  • Exploratory data analysis - Principal Components Analysis
  • Differential expression analysis, Introduction to Gene Specific Analysis
  • Visualizations of RNA-Seq data: dot plots, chromosome viewer, and hierarchical clustering
  • Biological interpretation with gene ontology analysis
  • Save and automate your analysis pipeline

Seminar and Live Demo - Single Cell RNA-Seq Analysis with Partek Flow
  • Single cell QAQC
  • Pooling cells from multiple samples
  • Data exploration via t-SNE chart
  • Identifying biomarkers
  • Detecting transcriptional signatures
  • Pathways analysis

Seminar and Live Demo - DNA-Seq and ChIP-Seq Analysis with Partek Flow 
  • Variant calling
  • Variant filtering and prioritization of variants
  • Visualizing variants


Microarray Analysis
May 16, 2018 | 10:30 a.m. - 3:00 p.m.

Introduction to Gene Expression Analysis
  • Experimental design
  • Statistics

Gene Expression with Partek® Genomics Suite® and Partek® Pathway
  • Import, normalization and quality control
  • Exploratory data analysis - Principal Components Analysis
  • Differential gene expression with the powerful Partek ANOVA implementation
  • Creating lists of significant differentially expression genes
  • Hierarchical clustering and other data visualizations
  • Discovering enriched functional groups using gene ontology pathway analysis

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