University of Pittsburgh
RNA-Seq and Single Cell Analysis Workshop
Join us for a complimentary data analysis workshop lead by our data analysis experts. Using Partek® Genomics Suite® analysis software, you will be lead step-by-step through the analysis of an RNA-Seq data set. We will teach you analysis best practices and how to overcome common challenges. There will also be a seminar on how to analyze Single Cell data using Partek® Flow® software.

RNA-Seq Analysis with Partek Genomics Suite

March 21, 2018 | 9:00 a.m. - noon

  • Overview of Partek Genomics Suite
  • Hands-on training on normalized read counts
    • Import FPKM count matrix
    • Annotate samples
    • Filter low expression genes
    • Data normalization
    • Data visualize distribution: PCA, box plot, histogram etc.
    • Differential expression detection
    • Result visualization: Volcano plot, dot plot, heatmap etc.
    • Significant gene list creation
    • Data export
  • Q&A
Single Cell Analysis with Partek Flow

March 21, 2018 | 1:00 p.m. - 3:00 p.m.

  • Overview of Partek Flow
  • Live demo of Partek Flow on bulk/SC RNA-Seq data analysis
    • Data import
    • QA/QC
    • Alignment
    • Quantification and normalization
    • Classification
    • Differential expression detection
    • Visualization: PCA, t-SNE, genome browser etc.
  • Q&A