Gene marker lists that describe various cell subtypes identified in selected peer-reviewed publications.
name count description source tags
Monocytes 146 Union of human monocyte marker gene lists from: Lyons et al. 2017 doi:10.1038/s41698-017-0031-0 These marker gene lists were originally described in: Ziegler-Heitbrock et al. 2010 doi:10.1371/journal.pone.0145342 Wong et al. 2011 doi:10.1182/blood-2010-02-258558 10.1038/s41698-017-0031-0, 10.1371/journal.pone.0145342, 10.1182/blood-2010-02-258558 Immune, Published Download list
B cells 93 Union of human B cell marker gene lists from: Bindea et al. 2013 doi:10.1016/j.immuni.2013.10.003 Liu et al. 2016 doi:10.1186/s12859-016-1012-y Palmer et al. 2006 doi:10.1186/1471-2164-7-115 Zheng et al. 2017 doi:10.1038/ncomms14049 10.1016/j.immuni.2013.10.003, 10.1186/s12859-016-1012-y, 10.1186/1471-2164-7-115, 10.1038/ncomms14049 Immune, Published Download list
CD8 T cells 42 Union of human CD8 T cells marker gene lists from: Bindea et al. 2013 doi:10.1016/j.immuni.2013.10.003 Palmer et al. 2006 doi:10.1186/1471-2164-7-115 10.1016/j.immuni.2013.10.003, 10.1186/1471-2164-7-115 Immune, Published Download list
B cells 93 Union of human B cell marker gene lists from: Bindea et al. 2013 doi:10.1016/j.immuni.2013.10.003 Liu et al. 2016 doi:10.1186/s12859-016-1012-y Palmer et al. 2006 doi:10.1186/1471-2164-7-115 Zheng et al. 2017 doi:10.1038/ncomms14049 10.1016/j.immuni.2013.10.003, 10.1186/s12859-016-1012-y, 10.1186/1471-2164-7-115, 10.1038/ncomms14049 Immune, Published Download list
Monocytes 146 Union of human monocyte marker gene lists from: Lyons et al. 2017 doi:10.1038/s41698-017-0031-0 These marker gene lists were originally described in: Ziegler-Heitbrock et al. 2010 doi:10.1371/journal.pone.0145342 Wong et al. 2011 doi:10.1182/blood-2010-02-258558 10.1038/s41698-017-0031-0, 10.1371/journal.pone.0145342, 10.1182/blood-2010-02-258558 Immune, Published Download list
G2/M phase (Whitfield et al. 2002) 133 Genes differentially expressed during the G2/M phase of the cell cycle 10.1091/mbc.02-02-0030 Published, Cell Cycle Download list
S phase (Whitfield et al. 2002) 113 Genes differentially expressed during S phase of the cell cycle 10.1091/mbc.02-02-0030 Published, Cell Cycle Download list
T cells 51 Union of human T cell marker gene lists from: Bindea et al. 2013 doi:10.1016/j.immuni.2013.10.003 Lyons et al. 2017 doi:10.1038/s41698-017-0031-0 10.1016/j.immuni.2013.10.003, 10.1038/s41698-017-0031-0 Immune, Published Download list
Monocytes 146 Union of human monocyte marker gene lists from: Lyons et al. 2017 doi:10.1038/s41698-017-0031-0 These marker gene lists were originally described in: Ziegler-Heitbrock et al. 2010 doi:10.1371/journal.pone.0145342 Wong et al. 2011 doi:10.1182/blood-2010-02-258558 10.1038/s41698-017-0031-0, 10.1371/journal.pone.0145342, 10.1182/blood-2010-02-258558 Immune, Published Download list
GABAergic Vip Mybpc1 9 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type VIP Mybpc1; Find Cluster ID - f01; Present Markers - Crispld2 Cxcl14 Tpm2 Itih5 Cox6a2; Sparse Markers - Tmem182; Absent Markers - Npy2r Sorl1 Car4 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Vip Parm1 8 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type VIP Parm1; Find Cluster ID - f02; Present Markers - Cxcl14 Car4 Tac2; Sparse Markers - Dmp1 Syt10; Absent Markers - Mybpc1 Npy2r Slc44a5 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Vip Sncg 10 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type VIP Sncg; Find Cluster ID - f03 Present Markers - Reln Npy2r Tnfaip8l3 Cadps2 2310042E22Rik Egln3 Tpd52l1 Megf10; Sparse Markers - Casq2 Edn3; 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Vip Chat 9 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type VIP Chat; Find Cluster ID - f04 Present Markers - Aebp1 Slc18a3 Pvrl4 Nrp1 Sema5b Pcdh15 Phlda1; Absent Markers - Crh Pnoc 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Vip Gpc3 5 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type VIP Gpc3; Find Cluster ID - f05 Present Markers - Bcar3 Mab21l1 Pbx3 Nrp1 Crh 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Ndnf Car4 14 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type Ndnf Car4; Find Cluster ID - f06 Present Markers - Lamp5 Tnfaip8l3 Atp6ap1l Gabrd Npy Pde11a Has2 Krt12 2310042E22Rik Ndst4 Tnnt1 Reln Mpped1; Absent Markers - Runx1t1 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Ndnf Cxcl14 13 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type Ndnf Cxcl14; Find Cluster ID - f07 Present Markers - Pde1a Pcdh18 4921511H03Rik Rgs12 Cd34 Egln3 Thsd7b Reln Krt12 2310042E22Rik Ndst4; Sparse Markers - Scrg1; Absent Markers - Car4 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic Igtp 12 Allen Brain Atlas; Tasic et al. 2017 doi:10.1038/nn.4216; GABAergic neuronal cell type Igtp Find Cluster ID - f08 Present Markers - Lhx6 Cdca7 Myo5b Pdlim3 Efcab6 Tnnt1 Cryab Nfib Kit Lamp5; Absent Markers - Cxcl14 Arhgef3 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
GABAergic cells and Glutamatergic cells 10 Marker genes from Tasic et al. 2016 (doi:10.1038/nn.4216) used to distinguish between GABAergic cells and Glutamatergic cells. 10.1038/nn.4216 Neuronal, Allen Brain Institute, Published Download list
Microglia (Tasic et al. 2016) 26 f47 Micro Ctss from Tasic et al. 2016 10.1038/nn.4216 Immune, Neuronal, Allen Brain Institute, Published Download list
Oligodendrocytes (Tasic et al. 2016) 36 f45 Oligo 9630013A20Rik and f46 Oligo Opalin from Tasic et al. 2016 10.1038/nn.4216 Immune, Neuronal, Allen Brain Institute, Published Download list

Pages