Institut Imagine, Hôpital Necker
Data Analysis With Partek Software
Join us for a complimentary data analysis workshop to learn how to get started with microarray and next generation sequencing (NGS) analysis using Partek software. You will learn to integrate microarray data with NGS data and overcome common analysis challenges.

3 May 2017 | 9:00 a.m. - 4:00 p.m.

AGENDA:

Introduction to Data Analysis
  • Experimental design
  • Data transformations: normalisation and scaling
  • Exploratory data analysis
  • Inferential statistics for gene expression studies
  • Batch correction using statistics
  • Statistical modelling

RNA-Seq Exercise with Partek® Genomics Suite® and Partek® Pathway™
  • Overview of RNA-Seq workflow
  • Import and normalisation
  • Exploratory analysis
  • Creating list of differentially expressed genes
  • Detecting alternative spliced genes
  • Biological interpretation by gene enrichment and pathway analysis
  • Visualising NGS data

Microarray Exercise with Partek Genomics Suite and Partek Pathway
  • Import and normalisation
  • Exploratory analysis
  • Creating list of differentially expressed genes
  • Venn diagram
  • Hierarchical clustering
  • Integration with miRNA data

Visualisation Exercise with Partek Genomics Suite
  • Hierarchical clustering
  • Scatterplot
  • Volcano plot
  • Box-and-whiskers plot
  • ANOVA interaction plot
  • SOM clustering