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Flexible Solutions for NGS Data Analysis

Partek Flow software is designed specifically for the analysis needs of next generation sequencing applications including single-cell, RNA, small RNA, and DNA sequencing. With an easy-to-use graphical interface and the ability to build your own custom analysis pipelines or download pipelines built by our scientists, you can perform:

  • Alignment
  • Quantification
  • Quality control


  • Statistics
  • Visualization


Find the Biology in Your Data

Using simple point-and-click actions, Partek Flow software makes it easy to find the biological meaning within your data.

  • Measure gene expression levels
  • Discover coding SNPs
  • Identify differential expression at the gene and transcript level
  • Detect gene fusions and novel isoforms

Want more?
Watch the analysis of an RNA-Seq study in Partek Flow

Partek Flow on a Tablet Device
Intuitive for Biologists

Partek Flow was built to enable researchers to self-sufficiently perform data analysis. Here are a few of the features that you will appreciate:

  • Graphical, Data Smart Interface™  for a point-and-click environment that presents only relevant options
  • Pre-installed and downloadable analysis pipelines including AmpliSeq, Whole Transcriptome, and Small RNA-Seq
  • Interactive visualizations make getting to the biology in your data easy
  • First-class technical support is never more than a click or phone call away
  • Accessible from any internet device including tablet, smart phone, or computer
  • Collaborate with colleagues anywhere on the same project without transferring data
  • Seamless integration with all your Partek software for a start-to-finish solution


Powerful for Bioinformaticists

Partek Flow has the tools and statistics that appeal to bioinformaticists and system administrators:

  • Powerful statistics integrated throughout for biologically accurate results
  • Custom pipeline creation so that you can create your own pipelines and share with others
  • Management of user permissions for users anywhere to increase security and collaboration and eliminate costly data transfer
  • Controlled vocabulary to standardize terminology and improve consistency across studies
  • Centralized installation including desktop, server, cluster, or cloud with access from any browser


Powerful for Bioinformaticists

Try out our software for yourself with a free two-week trial.

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System Requirements